Friday 29 April 2011

AUDocker 1.0 - Easy tool for virtual screening with AutoDock Vina

AUDocker is a simple stand alone software tool for docking with Vina, developed with a view to simplify the procedures and to make the interface more user friendly.


Download the software from here
https://sourceforge.net/projects/audocker/files/?

11 comments:

  1. Hi thanks tool
    Could you tell me the installation requirements

    I had installed the tool with MGL tool vina and python and even .net4
    but while running the programm it is showing Error
    dialog box

    ReplyDelete
  2. I had the same problem, I was trying to run it on a 64-bit windows 7 and it would just say "error" when I hit Run. I figured out the issue though, it was that Vina had installed itself in the "C:\Program Files(x86)" folder instead of just "C:\Program Files". I just copied the entire Scripps Research Institute folder into the "C:\Program Files" folder and AUDocker worked perfectly.

    ReplyDelete
  3. In my case, though the Vina was alrerady installed in C:\Program Files, still it gives error !
    First, when I click on audockerle v1.msi, then just before getting opened it gives error, then when I start the docking then as soon as it comes to 100% completion, it gives error " audockerle stopped working and needs to close".
    I tried using mine as well as tutorial protein ligands, but none worked ??? Same happens with AUDocker 1.1.2.rar (216.4 kB), which gives an instant error " file not found ", and later says " complete" but never return any ligand poses ??? Plz help ??

    ReplyDelete
  4. Pretty good post. I just stumbled upon your blog and wanted to say that I have really enjoyed reading your blog posts. Any way I'll be subscribing to your feed and I hope you post again soon.

    Licence de marque & Agence de licence

    ReplyDelete
  5. Really i am impressed from this post....the person who create this post he is a great human..thanks for shared this with us found this informative and interesting blog so i think so its very useful and knowledge able. I would like to thank you for the efforts you have made in writing this article.

    Marchi in licenza & Diventare Licenziatario

    ReplyDelete
  6. Hey admin, your blog's design is so cool and loving it. Your articles are so cool. Please continue this great work. Greets!!!

    Fashion Licensing & Brand development

    ReplyDelete
  7. Please keep sharing more and more information about this.This is a good information of the fashion licensing articles and really like your site.
    Marchi in licenza & Diventare Licenziatario

    ReplyDelete
  8. In silico study in medicine takes advantage of computer simulations to predict the protein-ligand binding site, reducing real laboratory experiments and accelerating the drug discovery process in a more efficient and economical way. Virtual Screening

    ReplyDelete
  9. I have successfully installed the AUDocker LE. when I use convert the ligands conversion is appearing on the portal but no file is created in the folder. Receptor upload is also OK as I have already created pdbqt file. When I used the run option, the AUdocker LE window appears with "audockerle has stopped working" and check online for a solution and close the program or close the program options appears.

    ReplyDelete
  10. Please, let me know the solution.

    ReplyDelete